WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:
Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway       Name:Spliceosome       ID:03040
C=127; O=3; E=0.12; R=25.47; rawP=0.0002; adjP=0.0004
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000085872 NA CHERP calcium homeostasis endoplasmic reticulum protein 10523 ENSG00000085872
2  ENSG00000099995 NA SF3A1 splicing factor 3a, subunit 1, 120kDa 10291 ENSG00000099995
3  ENSG00000092199 NA HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 3183 ENSG00000092199


Database:KEGG pathway       Name:RNA transport       ID:03013
C=151; O=2; E=0.14; R=14.28; rawP=0.0087; adjP=0.0087
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000005007 NA UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 5976 ENSG00000005007
2  ENSG00000126883 NA NUP214 nucleoporin 214kDa 8021 ENSG00000126883




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).